openModeller is an ecological niche modelling library, providing a uniform method to model species distribution patterns with a variety of algorithms.

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openModeller Funded by:

Welcome to the openModeller project home page!

openModeller aims to provide a flexible, user friendly, cross-platform environment where the entire process of conducting a fundamental niche modeling experiment can be carried out. The software includes facilities for reading species occurrence and environmental data, selection of environmental layers on which the model should be based, creating a fundamental niche model and projecting the model into an environmental scenario.  A number of algorithms are provided as plugins, including GARP, Climate Space Model, Bioclimatic Envelopes, Support Vector Machines and others.

The project is currently being developed by the Centro de Referência em Informação Ambiental (CRIA), Escola Politécnica da USP (Poli), and Instituto Nacional de Pesquisas Espaciais (INPE) as an open-source initiative. It is funded by Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP), the Incofish project, and by individuals that have generously contributed their time. Previous collaborators include the BDWorld project (University of Reading), the University of Kansas Natural History Museum & Biodiversity Research Center (KU), and other individual participants. 


 

openModeller at TDWG2006
Monday, 16 October 2006
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Missouri Botanical Gardens, US
Tim Sutton and Renato De Giovanni are attending TDWG2006 (TDWG is the Taxonomic Databases Working Group) this week. Tim will be presenting our proposal for a standard API for performing Ecological Niche Modelling over the Internet. There is a draft of the API available on the openModeller wiki, as well as a use case diagram
 
openModeller used in Cyclamen study
Wednesday, 20 September 2006
Chris Yesson and Alastair Culham (University of Reading, UK) have published a phyloclimatic study on Cyclamen a genus of popular garden plants. In the study they used openModeller (Bioclim) and MaxEnt to compute the climatic niche for members of this genus in past, present and future climates. The openModeller Desktop 'hotspot' tool was also used in the analysis. This tool will be generally available in the next version of openModeller Desktop! Full text of the article is available at the BioMed Central Website . The study also recieved mention in the popular press . Update: The study is discussed in a BBC Leading Edge radio show interview (it's right near the end). The aforementioned link needs Real Audio to be present on your computer.
 
Predicting habitat suitability with machine learning models
Tuesday, 29 August 2006
An article was recently published in Ecological Modelling describing procedures used to model Pine forest distribution in Spain. The authors used Grass and R to carry out the modelling process. openModeller was not used but the article is still interesting for those involved in ecological niche modelling. The complete article is available for download as a pdf document .
Read more...
 
openModeller Seminar June 2006
Friday, 30 June 2006

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Members of the openModeller community got together for a meeting at the University of São Paulo , Brazil. Attendees provided information about ongoing research into optimisation, architecture, clustering and profiling. Attendees were:

  1. Renato De Giovanni
  2. Ana Carolina Lorena
  3. César Bravo
  4. Fabiana Santana
  5. Mariana Ramos Franco
  6. Prof. Liria M. Sato
  7. Prof. Pedro Luiz P. Corrêa
  8. Daniel Assis Alfenas
  9. Prof. João José Neto
  10. Prof. Antônio Mauro Saraiva
  11. Jeferson Martin
  12. Tim Sutton
 
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